| ABC transporter, ATP binding protein | 31 |
| sensory box/GGDEF family protein | 16 |
| dehydrogenase family | 15 |
| major facilitator family transporter | 11 |
| transposase TnpA | 8 |
| transposase Tn5 | 8 |
| SidE gene family | 6 |
| peptide methionine sulfoxide reductase | 6 |
| cold shock domain family protein | 6 |
| unknown gene family | 6 |
| arginine 3rd transport system periplasmic binding protein | 6 |
| unknown protein family | 6 |
| response regulator family | 6 |
| enhanced entry protein EnhA | 5 |
| chemiosmotic efflux system protein A-like protein | 5 |
| transposase (ISSod6) | 5 |
| TPR repeat protein (enhanced entry protein EnhC) | 5 |
| twitching motility protein family | 5 |
| zinc metalloprotease (virulence metalloprotease, hemagglutinin/protease, elastase) | 5 |
| hypothetical (endonuclease?) | 5 |
| dehydrogenase family | 5 |
| transposase family | 4 |
| amino acid antiporter (glutamate/gamma-aminobutyrate antiporter) | 4 |
| acyl CoA dehydrogenase | 4 |
| aldehyde dehydrogenase | 4 |
| conserved hypothetical protein | 4 |
| polyhydroxyalkanoic synthase (PHA synthase) (poly(3-hydroxyalkanoate) polymerase) (PHA polymerase) | 4 |
| exported protein | 4 |
| carbon storage regulator | 4 |
| IcmL homolog | 4 |
| carbonic anhydrase/sulfate transporter family | 4 |
| copper efflux ATPase family | 4 |
| phage repressor | 4 |
| transmembrane protein | 4 |
| LvrA | 4 |
| conserved hypothetical protein | 4 |
| Kup system potassium uptake protein | 3 |
| anthranilate synthase/carbamoyl phosphate synthase family | 3 |
| beta-ketoacyl synthase family | 3 |
| hypothetical (transposase?) global transcription activator SNF2L4 (SNF2-beta) | 3 |
| unknown gene family | 3 |
| transcriptional regulator | 3 |
| hypothetical protein | 3 |
| multidrug resistance secretion protein | 3 |
| methylase | 3 |
| IcmC/IcmD family | 3 |
| outer membrane efflux (channel) protein | 3 |
| rhodanese domain protein | 3 |
| ATP-dependent RNA helicase (cold shock DEAD box protein A) | 3 |
| thiolase | 3 |
| acetyl CoA carboxylase, biotin carboxylase subunit | 3 |
| unknown gene family | 3 |
| O-acetyltransferase | 3 |
| peptide chain release factor | 3 |
| multidrug resistance protein | 3 |
| peptide transport protein | 3 |
| polypeptide deformylase (peptide deformylase) | 3 |
| 3-hydroxyacyl CoA dehydrogenase | 3 |
| transmembrane protein | 3 |
| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) | 3 |
| unknown gene family | 3 |
| lipid A lauroyl acyltransferase | 3 |
| sigma factor family | 3 |
| IHF/HUP family | 3 |
| major outer membrane protein | 3 |
| alkylhydroperoxide reductase family | 3 |
| aminotransferase family | 3 |
| hypothetical protein | 3 |
| ATP synthase F1 family | 3 |
| UVB-resistance protein UVR8 | 3 |
| 3-oxoacyl-(acyl carrier protein) synthase II family | 3 |
| acyl carrier protein | 3 |
| cytochrome c5 | 3 |
| leucine aminopeptidase | 3 |
| Fis transcriptional activator (factor for inversion stimulation) (DNA-binding protein) | 3 |
| unknown gene familly | 2 |
| ribosomal large subunit (23S rRNA) pseudouridine synthase C | 2 |
| DNA gyrase subunit B | 2 |
| ClpA/ClpB family | 2 |
| dehydrogenase familyl | 2 |
| GTP-binding protein, GTP1/Obg family | 2 |
| gene family | 2 |
| gene family | 2 |
| SOS mutagenesis and repair UmuC protein | 2 |
| SOS (error prone) mutagenesis protein UmuD (RumA) | 2 |
| guanosine-3,5-bis(diphosphate)-3-pyrophosphohydrolase | 2 |
| amino acid permease family protein (amino acid transporter) | 2 |
| catalase-peroxidase KatB | 2 |
| cytochrome b-561 transmembrane protein | 2 |
| reverse transcriptase | 2 |
| Smr domain protein | 2 |
| membrane associated zinc metalloprotease | 2 |
| guanylate cyclase | 2 |
| D-xylose (galactose, arabinose)-proton symporter | 2 |
| signal recognition particle/receptor protein | 2 |
| multidrug resistance protein | 2 |
| inner membrane protein | 2 |
| phospho-2-dehydro-3-deoxyheptonate aldolase (2-keto-3-deoxy-D-arabino-heptulosonate 7-phophate synthase) | 2 |
| methylase family | 2 |
| conserved hypothetical protein | 2 |
| unknown gene family | 2 |
| lipase A | 2 |
| D-3-phosphoglycerate dehydrogenase (D-isomer specific 2-hydroxyacid dehydrogenase) | 2 |
| two component response regulator (response regulator receiver) | 2 |
| unknown gene family | 2 |
| cation efflux transporter (calcium transporting ATPase) (cation transporting ATPase) | 2 |
| transcriptional regulator, LysR family | 2 |
| dienelactone hydrolase family protein | 2 |
| unknown gene family | 2 |
| unknown gene family | 2 |
| peptidyl-prolyl cis-trans isomerase | 2 |
| 2-polyprenyl-6-methoxyphenol hydroxylase (monooxygenase) (oxidoreductase, FAD-binding, UbiH/Coq6 family) | 2 |
| LphB | 2 |
| heavy-metal transporting P-type ATPase | 2 |
| UDP-N-acetylmuramate:L-alanine ligase MurC (L-alanine adding enzyme) | 2 |
| cell shape/cell division protein family | 2 |
| unknown gene family | 2 |
| unknown gene family | 2 |
| unknown gene family | 2 |
| SdbC | 2 |
| alcohol dehydrogenase | 2 |
| small heat shock protein HspC2 (molecular chaperone) | 2 |
| siderophore biosynthetic enzyme FrgA | 2 |
| phosphatidylglycerophosphate synthase (CDP-diacylglycerol-glycerol-3-phosphate-3-phosphatidyltransferase) | 2 |
| aminopeptidase N | 2 |
| unknown gene family | 2 |
| DNA helicase family | 2 |
| deoxyguanosinetriphosphate (dGTP) triphosphohydrolase | 2 |
| sugar kinase | 2 |
| PhoH protein (ATPase) (phosphate starvation inducible protein) | 2 |
| inosine-5'-monophosphate dehydrogenase | 2 |
| chemiosmotic efflux system B protein C (outer membrane efflux protein) | 2 |
| unknown gene family | 2 |
| methanol dehydrogenase regulatory protein (MoxR protein) | 2 |
| unknown gene family | 2 |
| transcriptional regulator | 2 |
| endonuclease III/adenine glycosylase family | 2 |
| methionyl tRNA synthetase/CsaA chaperonin family | 2 |
| unknown gene family | 2 |
| cysteine S-methyltransferase | 2 |
| chromosome partitioning protein ParB | 2 |
| alpha-amylase, putative | 2 |
| phosphatidoglycerophosphate synthase? | 2 |
| phospholipase C (phosphatidylcholine hydrolyzing) | 2 |
| sterol desaturase | 2 |
| adenylate cyclase | 2 |
| hypothetical protein | 2 |
| protein-disulfide oxidoreductase (disulfide bond formation) | 2 |
| hypothetical protein | 2 |
| AbiD phage protein | 2 |
| proline/glycine betaine transporter | 2 |
| chemiosmotic efflux system B protein B (heavy metal efflux) | 2 |
| chemiosmotic efflux system C protein B | 2 |
| chemiosmotic efflux system C protein C (metal ion efflux outer membrane protein) | 2 |
| glycosyl hydrolase (beta-hexosaminidase A) (beta-N-acetylglucosaminidase) | 2 |
| imidazoleglycerol-phosphate synthase, cyclase subunit HisF | 2 |
| amidotransferase HisH (glutamine amidotransferase) | 2 |
| unknown gene family | 2 |
| methyltransferase family | 2 |
| stearoyl CoA 9-desaturase (fatty acid desaturase) | 2 |
| dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase E2 component) | 2 |
| conserved hypothetical protein | 2 |
| peptide synthetase (non-ribosomal) | 2 |
| unknown gene family | 2 |
| regulatory protein, SyrP-like | 2 |
| transposase (ISSod13) (integrase) | 2 |
| polyketide synthase, type I | 2 |
| citrate synthase | 2 |
| phenazine biosynthesis PhzF (oxidoreductase) (PCA synthesis?) | 2 |
| hypothetical protein | 2 |
| unknown gene family | 2 |
| universal stress protein A (UspA) | 2 |
| cysteine protease (papain C1 family) | 2 |
| aldo/keto reductases | 2 |
| unknown gene family | 2 |
| alanine acetyltransferase | 2 |
| SidC gene family | 2 |
| methionine aminopeptidase | 2 |
| RND multidrug efflux membrane fusion protein | 2 |
| translation elongation factor Tu (EF-Tu) | 2 |
| transcriptional regulator (AsnC family) | 2 |
| transmembrane protein | 2 |
| NAD-glutamate dehydrogenase | 2 |
| aspartate aminotransferase A | 2 |
| rare lipoprotein A | 2 |
| protein kinase family | 2 |
| transcriptional regulator | 2 |
| integrase (phage related) | 2 |
| ATP-dependent DNA helicase | 2 |
| ecto-ATP diphosphohydrolase II (ectonucleoside triphosphate diphosphohydrolase 1) | 2 |
| thiol:disulfide interchange protein DsbD | 2 |
| unknown gene family | 2 |
| peptidoglycan associated lipoprotein/MotB gene family | 2 |
| transposase ORF-A | 2 |
| protease DO (periplasmic serine endoprotease) | 2 |
| type IV pilin protein family | 2 |
| transposase (resolvase, DNA invertase) (resolvase/integrase) | 2 |
| transcriptional regulator? | 2 |
| single strand DNA binding protein (ssb) | 2 |
| HipA family protein? | 2 |
| flagellar biosynthetic protein FlhB | 2 |
| DNA adenine methylase | 2 |
| glycosyl transferase | 2 |
| serine/threonine-protein kinase | 2 |
| secreted protein | 2 |
| lytic murein transglycosylase (membrane bound) | 2 |
| polysaccharide biosynthesis protein | 2 |
| transposase | 2 |
| thioredoxin | 2 |
| polysaccharide deacetylase | 2 |
| cytochrome D ubiquinol oxidase, subunit I | 2 |
| leucine aminopeptidase | 2 |
| acyl-(acyl carrier protein)-UDP-N-acetylglucosamine acyltransferase | 2 |
| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | 2 |
| lipid A-disaccharide synthase | 2 |
| virulence factor MviN (integral membrane protein, inner membrane), motility? | 2 |
| HlyD family secretion protein | 2 |
| flagellar basal body rod protein FlgG | 2 |
| pirin (chromosome condensation) protein | 2 |
| ABC transporter permease protein | 2 |
| transcriptional regulator, LysR family | 2 |
| malate dehydrogenase (NAD-linked), malic enzyme (NAD-dependent, oxaloacetate-decarboxylating) | 2 |
| unknown gene family | 2 |
| DNA topoisomerase IV subunit A | 2 |
| unknown gene family | 2 |
| ATP synthase F1, subunit alpha (F0F1-type ATP synthase alpha subunit) | 2 |
| alginate O-acetyltransferase AlgI | 2 |
| conserved hypothetical protein | 2 |
| zinc binding dehydrogenase (zinc binding oxidoreductase) (quinone oxidoreductase) (alcohol dehydrogenase) | 2 |
| hypothetical (phosphatidylethanolamine-binding protein?) | 2 |
| unknown gene family | 2 |
| hemin binding protein Hbp | 2 |
| purine NTPase, putative | 2 |
| transcriptional regulator, LysR family | 2 |
| sensor histidine kinase/response regulator LuxN | 2 |
| oxidoreductase, acyl CoA dehydrogenase family (acyl CoA dehydrogenase) | 2 |
| membrane bound lytic murein transglycosylase D | 2 |
| unknown gene family | 2 |
| (ProQ, activator of ProP osmoprotectant transporter?) | 2 |
| cytochrome c biogenesis protein family | 2 |
| metallo-beta lactamase family (cleavage and polyadenylation specificity factor) | 2 |
| tryptophan/tyrosine permease (tyrosine-specific transport protein) | 2 |
| signal peptide peptidase family | 2 |